BC332_29212 protein (Capsicum chinense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BC332_29212

50S ribosomal protein L27. (150 aa)

Predicted Functional Partners:

BC332_32263

0.982

BC332_29043

0.982

BC332_05447

0.982

BC332_05706

0.982

BC332_18356

0.980

BC332_20883

0.977

BC332_05155

0.977

BC332_21241

0.976

BC332_16945

0.970

BC332_00459

0.967

Your Current Organism:

Capsicum chinense

NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BC332_00459	BC332_05155	A0A2G3DBJ9	A0A2G3D7A1	RF_PROK_I domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.955
BC332_00459	BC332_05447	A0A2G3DBJ9	A0A2G3D853	RF_PROK_I domain-containing protein.	Uncharacterized protein.	0.975
BC332_00459	BC332_05706	A0A2G3DBJ9	A0A2G3D8S3	RF_PROK_I domain-containing protein.	Ribosomal_TL5_C domain-containing protein.	0.946
BC332_00459	BC332_16945	A0A2G3DBJ9	A0A2G3CAH5	RF_PROK_I domain-containing protein.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.934
BC332_00459	BC332_18356	A0A2G3DBJ9	A0A2G3BY62	RF_PROK_I domain-containing protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.988
BC332_00459	BC332_20883	A0A2G3DBJ9	A0A2G3BRC6	RF_PROK_I domain-containing protein.	60S ribosomal protein L5.	0.898
BC332_00459	BC332_21241	A0A2G3DBJ9	A0A2G3BSB7	RF_PROK_I domain-containing protein.	Uncharacterized protein.	0.946
BC332_00459	BC332_29043	A0A2G3DBJ9	A0A2G3BBH1	RF_PROK_I domain-containing protein.	50S ribosomal protein L9, chloroplastic.	0.974
BC332_00459	BC332_29212	A0A2G3DBJ9	A0A2G3BBU5	RF_PROK_I domain-containing protein.	50S ribosomal protein L27.	0.967
BC332_00459	BC332_32263	A0A2G3DBJ9	A0A2G3AXB2	RF_PROK_I domain-containing protein.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.666
BC332_05155	BC332_00459	A0A2G3D7A1	A0A2G3DBJ9	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	RF_PROK_I domain-containing protein.	0.955
BC332_05155	BC332_05447	A0A2G3D7A1	A0A2G3D853	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.995
BC332_05155	BC332_05706	A0A2G3D7A1	A0A2G3D8S3	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal_TL5_C domain-containing protein.	0.993
BC332_05155	BC332_16945	A0A2G3D7A1	A0A2G3CAH5	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.990
BC332_05155	BC332_18356	A0A2G3D7A1	A0A2G3BY62	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.996
BC332_05155	BC332_20883	A0A2G3D7A1	A0A2G3BRC6	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	60S ribosomal protein L5.	0.996
BC332_05155	BC332_21241	A0A2G3D7A1	A0A2G3BSB7	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.988
BC332_05155	BC332_29043	A0A2G3D7A1	A0A2G3BBH1	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	50S ribosomal protein L9, chloroplastic.	0.995
BC332_05155	BC332_29212	A0A2G3D7A1	A0A2G3BBU5	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	50S ribosomal protein L27.	0.977
BC332_05155	BC332_32263	A0A2G3D7A1	A0A2G3AXB2	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.989