STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_23805Serine/arginine repetitive matrix protein 1. (894 aa)    
Predicted Functional Partners:
BC332_28096
Uncharacterized protein.
   
 0.977
BC332_22094
Smg4_UPF3 domain-containing protein.
    
 0.970
BC332_01117
Cwf21 domain-containing protein.
   
 0.963
BC332_32142
Pre-mRNA-splicing factor 38A.
   
 0.936
BC332_34656
Uncharacterized protein.
    
  0.933
BC332_16654
Uncharacterized protein.
   
 0.931
BC332_24935
Nuclear cap-binding protein subunit 1.
    
 0.927
BC332_28801
Regulator of nonsense transcripts UPF2.
    
 
 0.923
BC332_12944
DEAD-box ATP-dependent RNA helicase 2.
    
 0.914
BC332_22896
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.906
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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