STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_24273E3 ubiquitin-protein ligase COP1. (669 aa)    
Predicted Functional Partners:
BC332_07862
Transcription factor HY5.
    
 0.998
BC332_10961
Cryptochrome-1.
    
 0.993
BC332_02109
Light-mediated development protein DET1.
    
 0.979
BC332_31112
Uncharacterized protein.
    
 0.977
BC332_02108
Light-mediated development protein DET1.
  
 
 0.975
BC332_16351
Uncharacterized protein.
    
 0.971
BC332_29245
Uncharacterized protein.
    
 0.968
BC332_30789
Protein GIGANTEA.
    
 0.960
BC332_13296
Protein GIGANTEA.
    
 0.949
BC332_11299
Protein GIGANTEA.
    
 0.935
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.