BC332_21132 protein (Capsicum chinense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BC332_21132

J domain-containing protein. (772 aa)

Predicted Functional Partners:

BC332_19373

0.946

BC332_18633

0.710

BC332_09226

0.524

BC332_17445

0.521

BC332_12492

0.521

BC332_05155

0.510

BC332_04181

0.487

BC332_32098

0.479

BC332_08378

0.479

BC332_00049

0.479

Your Current Organism:

Capsicum chinense

NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BC332_00049	BC332_08378	A0A2G3DAD8	A0A2G3CX17	Luminal-binding protein 5; Belongs to the heat shock protein 70 family.	Luminal-binding protein; Belongs to the heat shock protein 70 family.	0.939
BC332_00049	BC332_18633	A0A2G3DAD8	A0A2G3BYZ8	Luminal-binding protein 5; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein 17.	0.998
BC332_00049	BC332_21132	A0A2G3DAD8	A0A2G3BS35	Luminal-binding protein 5; Belongs to the heat shock protein 70 family.	J domain-containing protein.	0.479
BC332_00049	BC332_32098	A0A2G3DAD8	A0A2G3AXK1	Luminal-binding protein 5; Belongs to the heat shock protein 70 family.	Luminal-binding protein 5; Belongs to the heat shock protein 70 family.	0.952
BC332_04181	BC332_05155	A0A2G3D4C9	A0A2G3D7A1	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.892
BC332_04181	BC332_09226	A0A2G3D4C9	A0A2G3CZF6	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.892
BC332_04181	BC332_12492	A0A2G3D4C9	A0A2G3CDJ2	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal.	L51_S25_CI-B8 domain-containing protein.	0.892
BC332_04181	BC332_17445	A0A2G3D4C9	A0A2G3CBX1	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal.	Uncharacterized protein.	0.879
BC332_04181	BC332_21132	A0A2G3D4C9	A0A2G3BS35	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal.	J domain-containing protein.	0.487
BC332_05155	BC332_04181	A0A2G3D7A1	A0A2G3D4C9	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal.	0.892
BC332_05155	BC332_09226	A0A2G3D7A1	A0A2G3CZF6	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.994
BC332_05155	BC332_12492	A0A2G3D7A1	A0A2G3CDJ2	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	L51_S25_CI-B8 domain-containing protein.	0.958
BC332_05155	BC332_17445	A0A2G3D7A1	A0A2G3CBX1	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.942
BC332_05155	BC332_18633	A0A2G3D7A1	A0A2G3BYZ8	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Heat shock 70 kDa protein 17.	0.458
BC332_05155	BC332_21132	A0A2G3D7A1	A0A2G3BS35	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	J domain-containing protein.	0.510
BC332_08378	BC332_00049	A0A2G3CX17	A0A2G3DAD8	Luminal-binding protein; Belongs to the heat shock protein 70 family.	Luminal-binding protein 5; Belongs to the heat shock protein 70 family.	0.939
BC332_08378	BC332_18633	A0A2G3CX17	A0A2G3BYZ8	Luminal-binding protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein 17.	0.998
BC332_08378	BC332_21132	A0A2G3CX17	A0A2G3BS35	Luminal-binding protein; Belongs to the heat shock protein 70 family.	J domain-containing protein.	0.479
BC332_08378	BC332_32098	A0A2G3CX17	A0A2G3AXK1	Luminal-binding protein; Belongs to the heat shock protein 70 family.	Luminal-binding protein 5; Belongs to the heat shock protein 70 family.	0.952
BC332_09226	BC332_04181	A0A2G3CZF6	A0A2G3D4C9	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal.	0.892