BC332_21168 protein (Capsicum chinense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BC332_21168

Uncharacterized protein. (208 aa)

Predicted Functional Partners:

BC332_24512

0.730

BC332_15601

0.730

BC332_15600

0.730

BC332_14018

0.730

BC332_07207

0.730

BC332_07436

0.730

BC332_00686

0.730

BC332_02221

0.574

BC332_02220

0.574

BC332_18633

0.486

Your Current Organism:

Capsicum chinense

NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BC332_00686	BC332_02220	A0A2G3DCB0	A0A2G3DGL5	Uncharacterized protein.	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	0.605
BC332_00686	BC332_02221	A0A2G3DCB0	A0A2G3DGJ4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.605
BC332_00686	BC332_07207	A0A2G3DCB0	A0A2G3CTR3	Uncharacterized protein.	Uncharacterized protein.	0.494
BC332_00686	BC332_07436	A0A2G3DCB0	A0A2G3CUD9	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.874
BC332_00686	BC332_21168	A0A2G3DCB0	A0A2G3BS77	Uncharacterized protein.	Uncharacterized protein.	0.730
BC332_02220	BC332_00686	A0A2G3DGL5	A0A2G3DCB0	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Uncharacterized protein.	0.605
BC332_02220	BC332_02221	A0A2G3DGL5	A0A2G3DGJ4	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Protein kinase domain-containing protein.	0.663
BC332_02220	BC332_07207	A0A2G3DGL5	A0A2G3CTR3	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Uncharacterized protein.	0.605
BC332_02220	BC332_07436	A0A2G3DGL5	A0A2G3CUD9	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.605
BC332_02220	BC332_14018	A0A2G3DGL5	A0A2G3CHV6	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Clathrin heavy chain 1.	0.605
BC332_02220	BC332_15600	A0A2G3DGL5	A0A2G3C6Q8	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.605
BC332_02220	BC332_15601	A0A2G3DGL5	A0A2G3C6P7	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Clathrin heavy chain 2.	0.605
BC332_02220	BC332_18633	A0A2G3DGL5	A0A2G3BYZ8	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Heat shock 70 kDa protein 17.	0.431
BC332_02220	BC332_21168	A0A2G3DGL5	A0A2G3BS77	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Uncharacterized protein.	0.574
BC332_02220	BC332_24512	A0A2G3DGL5	A0A2G3BNJ0	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	Uncharacterized protein.	0.605
BC332_02221	BC332_00686	A0A2G3DGJ4	A0A2G3DCB0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.605
BC332_02221	BC332_02220	A0A2G3DGJ4	A0A2G3DGL5	Protein kinase domain-containing protein.	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	0.663
BC332_02221	BC332_07207	A0A2G3DGJ4	A0A2G3CTR3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.605
BC332_02221	BC332_07436	A0A2G3DGJ4	A0A2G3CUD9	Protein kinase domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.605
BC332_02221	BC332_14018	A0A2G3DGJ4	A0A2G3CHV6	Protein kinase domain-containing protein.	Clathrin heavy chain 1.	0.605