STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_22148DNA-directed RNA polymerases II, IV and V subunit 3. (103 aa)    
Predicted Functional Partners:
BC332_23289
DNA-directed RNA polymerases II, IV and V subunit 6A.
  
 0.993
BC332_17553
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
  
 0.990
BC332_29434
RNA_pol_L_2 domain-containing protein.
   
 0.979
BC332_29136
DNA-directed RNA polymerases II, IV and V subunit 11.
   
 0.972
BC332_05447
Uncharacterized protein.
  
 
 0.970
BC332_17278
DNA-directed RNA polymerase II subunit 4.
    
 0.969
BC332_15516
Uncharacterized protein.
   
 0.962
BC332_29043
50S ribosomal protein L9, chloroplastic.
  
 
 0.953
BC332_15326
Uncharacterized protein.
   
 0.952
BC332_12982
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
   
 0.950
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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