STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_22102Putative serine/threonine-protein kinase. (730 aa)    
Predicted Functional Partners:
BC332_26992
Cyclin-T1-4; Belongs to the cyclin family.
    
 0.749
BC332_07020
Uncharacterized protein; Belongs to the cyclin family.
    
 0.749
BC332_07423
Uncharacterized protein.
    
 0.749
BC332_00123
Cyclin-dependent kinase D-1; Belongs to the protein kinase superfamily.
  
 
0.664
BC332_12982
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.649
BC332_33682
Cyclin-H1-1; Belongs to the cyclin family.
    
 0.633
BC332_06748
HUA2-like protein 2.
    
 
 0.596
BC332_03570
Uncharacterized protein.
    
 
 0.596
BC332_17278
DNA-directed RNA polymerase II subunit 4.
    
  0.532
BC332_23289
DNA-directed RNA polymerases II, IV and V subunit 6A.
   
 
  0.530
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.