STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_22584Rop guanine nucleotide exchange factor 1. (578 aa)    
Predicted Functional Partners:
BC332_30381
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.
      
 0.584
BC332_08950
Rac-like GTP-binding protein 3.
    
 
 0.580
BC332_18991
Threonine--tRNA ligase.
      
 0.571
BC332_04140
Uncharacterized protein.
  
   
 0.522
BC332_22143
Germin-like protein.
  
     0.495
BC332_07819
Indole-3-acetate O-methyltransferase 1.
  
     0.489
BC332_01256
LOB domain-containing protein 31.
  
     0.486
BC332_11017
MADS-box transcription factor 26.
      
 0.485
BC332_03429
Uncharacterized protein.
  
     0.484
BC332_30196
Transcription factor HEC3.
  
     0.482
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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