STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_17999DEAD-box ATP-dependent RNA helicase 1. (510 aa)    
Predicted Functional Partners:
BC332_33321
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.933
BC332_04204
DEAD-box ATP-dependent RNA helicase 16.
  
 
0.859
BC332_28627
Something about silencing protein 10.
   
  0.845
BC332_16122
TMV resistance protein N.
   
  0.845
BC332_09915
CBF domain-containing protein.
   
 
 0.831
BC332_21699
Peter Pan-like protein.
   
   0.826
BC332_06589
DEAD-box ATP-dependent RNA helicase 13; Belongs to the DEAD box helicase family.
  
 
0.826
BC332_20374
Uncharacterized protein.
   
 
 0.818
BC332_10268
Uncharacterized protein.
   
   0.817
BC332_20389
Uncharacterized protein.
   
 
 0.813
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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