STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_18264Str_synth domain-containing protein. (445 aa)    
Predicted Functional Partners:
BC332_19918
Trigger factor-like protein TIG, Chloroplastic.
  
  
 0.708
BC332_31641
HRDC domain-containing protein.
   
 
 0.645
BC332_20883
60S ribosomal protein L5.
   
    0.645
BC332_04965
HRDC domain-containing protein.
   
 
 0.645
BC332_25946
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
    0.634
BC332_05632
60S ribosomal protein L23A.
   
    0.634
BC332_23343
Ribonuclease II, chloroplastic/mitochondrial.
   
 
 0.617
BC332_10841
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
 
 0.617
BC332_05149
Uncharacterized protein; Belongs to the RNR ribonuclease family.
   
 
 0.617
BC332_24100
Elongation factor Ts, mitochondrial.
  
  
 0.588
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.