STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_19349Tr-type G domain-containing protein. (662 aa)    
Predicted Functional Partners:
BC332_20883
60S ribosomal protein L5.
   
 
 0.827
BC332_05447
Uncharacterized protein.
   
 
 0.826
BC332_05706
Ribosomal_TL5_C domain-containing protein.
  
   0.806
BC332_18356
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.759
BC332_29043
50S ribosomal protein L9, chloroplastic.
   
 
 0.751
BC332_17061
60S ribosomal protein L12-1; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.724
BC332_05155
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.724
BC332_16945
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.723
BC332_11974
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.723
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.721
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.