STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_19600Uncharacterized protein. (329 aa)    
Predicted Functional Partners:
BC332_24935
Nuclear cap-binding protein subunit 1.
    
 0.704
BC332_03329
Nuclear cap-binding protein subunit 2.
    
 0.689
BC332_23216
Serine/arginine-rich splicing factor RS2Z33.
    
 0.646
BC332_26524
Small nuclear ribonucleoprotein F.
   
 0.626
BC332_23322
Uncharacterized protein.
    
 0.621
BC332_07086
Phytochrome A-associated F-box protein.
    
 0.599
BC332_07091
Phytochrome A-associated F-box protein.
    
 0.599
BC332_26720
Zinc finger CCCH domain-containing protein 4.
   
 
 0.559
BC332_08692
TPR_REGION domain-containing protein.
   
 
 0.556
BC332_12944
DEAD-box ATP-dependent RNA helicase 2.
   
 0.555
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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