STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_15567SNF2 domain-containing protein CLASSY 1. (1286 aa)    
Predicted Functional Partners:
BC332_10609
Protein CHROMATIN REMODELING 25.
  
  
 
0.903
BC332_30582
DNA repair and recombination protein RAD54.
  
  
 
0.902
BC332_29111
DNA helicase; Belongs to the RuvB family.
    
 0.735
BC332_15183
Actin-related protein 5; Belongs to the actin family.
    
 0.730
BC332_23289
DNA-directed RNA polymerases II, IV and V subunit 6A.
   
 0.716
BC332_28496
Chromatin structure-remodeling complex protein SYD.
  
0.712
BC332_21612
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.709
BC332_08206
Uncharacterized protein.
   
 0.709
BC332_01614
Uncharacterized protein.
  
  
 
0.703
BC332_00692
Uncharacterized protein.
  
  
 
0.702
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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