STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_17315RING-type E3 ubiquitin transferase. (664 aa)    
Predicted Functional Partners:
BC332_20784
Lariat debranching enzyme.
      
 0.533
BC332_09493
Cytochrome c-type biogenesis protein.
      
 0.528
BC332_23921
Uncharacterized protein.
  
 
 
 0.460
BC332_18748
Protein OBERON 2.
  
     0.459
BC332_24283
Uncharacterized protein.
  
     0.452
BC332_32137
Uncharacterized protein.
  
     0.451
BC332_06733
Methyltransferase.
  
     0.450
BC332_31879
PHD_Oberon domain-containing protein.
  
     0.448
BC332_24025
MACPF domain-containing protein CAD1.
  
     0.447
BC332_22406
Cytochrome b6-f complex subunit 7.
  
     0.447
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.