STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_1740560S ribosomal protein L5-1. (337 aa)    
Predicted Functional Partners:
BC332_20883
60S ribosomal protein L5.
     
0.902
BC332_29301
SAM-dependent MTase TRM10-type domain-containing protein.
   
 0.679
BC332_30421
Violaxanthin de-epoxidase, chloroplastic; Belongs to the calycin superfamily. Lipocalin family.
   
    0.625
BC332_31842
TATA-box-binding protein.
   
  
 0.613
BC332_01932
TATA-box-binding protein.
   
  
 0.613
BC332_31412
30S ribosomal protein S1, chloroplastic.
   
    0.489
BC332_01906
30S ribosomal protein S1, chloroplastic.
   
    0.489
BC332_15363
Uncharacterized protein.
   
 
 0.403
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.