STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_13360DNA_pol_B_2 domain-containing protein. (287 aa)    
Predicted Functional Partners:
BC332_05447
Uncharacterized protein.
   
 
 0.722
BC332_12492
L51_S25_CI-B8 domain-containing protein.
   
 
 0.666
BC332_17445
Uncharacterized protein.
   
 
 0.665
BC332_29476
Uncharacterized protein.
   
   0.659
BC332_16945
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.636
BC332_11974
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.636
BC332_16224
50S ribosomal protein L34.
   
 
 0.627
BC332_31818
50S ribosomal protein L19-1, chloroplastic.
  
 
 0.625
BC332_00651
50S ribosomal protein L19-1, chloroplastic.
  
 
 0.625
BC332_29802
Uncharacterized protein.
   
 
 0.620
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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