STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_13721DNA-directed RNA polymerases II and IV subunit 5A. (551 aa)    
Predicted Functional Partners:
BC332_23289
DNA-directed RNA polymerases II, IV and V subunit 6A.
   
 0.995
BC332_29434
RNA_pol_L_2 domain-containing protein.
  
 0.993
BC332_17553
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.992
BC332_03165
RPOLD domain-containing protein.
  
 0.986
BC332_29136
DNA-directed RNA polymerases II, IV and V subunit 11.
   
 0.984
BC332_17278
DNA-directed RNA polymerase II subunit 4.
   
 0.984
BC332_15326
Uncharacterized protein.
   
 0.981
BC332_18049
Uncharacterized protein.
   
 0.979
BC332_14374
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.978
BC332_15516
Uncharacterized protein.
   
 0.977
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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