BC332_10401 protein (Capsicum chinense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BC332_10401

Uncharacterized protein. (458 aa)

Predicted Functional Partners:

BC332_29271

0.851

BC332_09779

0.851

BC332_13362

0.832

BC332_28916

0.789

BC332_29111

0.737

BC332_15183

0.730

BC332_23289

0.722

BC332_17347

0.703

BC332_24464

0.652

BC332_17665

0.652

Your Current Organism:

Capsicum chinense

NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BC332_09779	BC332_10401	A0A2G3D106	A0A2G3CKI9	Uncharacterized protein.	Uncharacterized protein.	0.851
BC332_09779	BC332_13362	A0A2G3D106	A0A2G3CG41	Uncharacterized protein.	Uncharacterized protein.	0.747
BC332_09779	BC332_17665	A0A2G3D106	A0A2G3CCJ9	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.612
BC332_09779	BC332_23289	A0A2G3D106	A0A2G3BJZ7	Uncharacterized protein.	DNA-directed RNA polymerases II, IV and V subunit 6A.	0.685
BC332_09779	BC332_24464	A0A2G3D106	A0A2G3BNC0	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.612
BC332_09779	BC332_28916	A0A2G3D106	A0A2G3BB25	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.929
BC332_10401	BC332_09779	A0A2G3CKI9	A0A2G3D106	Uncharacterized protein.	Uncharacterized protein.	0.851
BC332_10401	BC332_13362	A0A2G3CKI9	A0A2G3CG41	Uncharacterized protein.	Uncharacterized protein.	0.832
BC332_10401	BC332_15183	A0A2G3CKI9	A0A2G3C5G2	Uncharacterized protein.	Actin-related protein 5; Belongs to the actin family.	0.730
BC332_10401	BC332_17347	A0A2G3CKI9	A0A2G3CBR1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.703
BC332_10401	BC332_17665	A0A2G3CKI9	A0A2G3CCJ9	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.652
BC332_10401	BC332_23289	A0A2G3CKI9	A0A2G3BJZ7	Uncharacterized protein.	DNA-directed RNA polymerases II, IV and V subunit 6A.	0.722
BC332_10401	BC332_24464	A0A2G3CKI9	A0A2G3BNC0	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.652
BC332_10401	BC332_28916	A0A2G3CKI9	A0A2G3BB25	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.789
BC332_10401	BC332_29111	A0A2G3CKI9	A0A2G3BBJ9	Uncharacterized protein.	DNA helicase; Belongs to the RuvB family.	0.737
BC332_10401	BC332_29271	A0A2G3CKI9	A0A2G3AZ36	Uncharacterized protein.	Uncharacterized protein.	0.851
BC332_13362	BC332_09779	A0A2G3CG41	A0A2G3D106	Uncharacterized protein.	Uncharacterized protein.	0.747
BC332_13362	BC332_10401	A0A2G3CG41	A0A2G3CKI9	Uncharacterized protein.	Uncharacterized protein.	0.832
BC332_13362	BC332_17665	A0A2G3CG41	A0A2G3CCJ9	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.879
BC332_13362	BC332_23289	A0A2G3CG41	A0A2G3BJZ7	Uncharacterized protein.	DNA-directed RNA polymerases II, IV and V subunit 6A.	0.777