STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_06667DNA mismatch repair protein MSH1, mitochondrial. (328 aa)    
Predicted Functional Partners:
BC332_17347
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.964
BC332_07102
DNA mismatch repair protein PMS1.
  
 0.956
BC332_08087
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 0.956
BC332_09001
DNA mismatch repair protein MLH1.
  
 0.943
BC332_34629
Uncharacterized protein.
  
 0.936
BC332_34497
DNA mismatch repair protein MSH5.
   
 0.933
BC332_25485
DNA mismatch repair protein MSH5.
   
 0.933
BC332_16554
DNA mismatch repair protein MSH2; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.933
BC332_06666
DNA mismatch repair protein MSH1, mitochondrial.
 
     0.919
BC332_05162
DNA mismatch repair protein MLH3.
  
 0.914
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.