STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_06833RING-type E3 ubiquitin transferase. (1014 aa)    
Predicted Functional Partners:
BC332_18572
Auxin-induced protein 6B.
  
     0.499
BC332_00759
Putative transcriptional regulator RABBIT EARS.
  
     0.494
BC332_17092
Dof zinc finger protein DOF2.1.
  
 
   0.478
BC332_11980
Uncharacterized protein.
  
     0.476
BC332_01180
Uncharacterized protein.
  
 
   0.468
BC332_13662
Uncharacterized protein.
  
     0.459
BC332_17638
Uncharacterized protein.
  
     0.448
BC332_28655
Dof zinc finger protein DOF5.3.
  
 
   0.440
BC332_13688
Putative transcription factor KAN2.
  
     0.438
BC332_15948
Transcriptional regulator SUPERMAN.
  
     0.437
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.