STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_08084Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (200 aa)    
Predicted Functional Partners:
BC332_04220
Zinc finger CCCH domain-containing protein 45.
    
 0.988
BC332_17813
FIP1[V]-like protein.
   
 0.973
BC332_27177
Uncharacterized protein.
    
 0.961
BC332_17768
Pre-mRNA cleavage factor Im 25 kDa subunit 1.
  
  
 
0.957
BC332_31518
Fip1 domain-containing protein.
   
 0.946
BC332_02120
Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.
  
  
 
0.932
BC332_08186
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.907
BC332_30387
Cleavage stimulation factor subunit 50.
     
 0.895
BC332_01771
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
   
 0.869
BC332_20409
Uncharacterized protein.
    
 
 0.855
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.