STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_08717RNA pseudouridine synthase 7. (330 aa)    
Predicted Functional Partners:
BC332_19419
Protein Iojap-related, mitochondrial.
  
 
 0.805
BC332_21841
TRUD domain-containing protein.
    
 
 0.784
BC332_05155
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.725
BC332_09226
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.720
BC332_20038
50S ribosomal protein L24, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
   
   0.711
BC332_12492
L51_S25_CI-B8 domain-containing protein.
   
   0.693
BC332_34754
rRNA methyltransferase 3, mitochondrial.
  
 
 0.683
BC332_29698
SpoU_methylase domain-containing protein.
  
 
 0.683
BC332_28523
Uncharacterized protein.
  
 
 0.664
BC332_24902
Uncharacterized protein.
  
 
 0.664
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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