STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_03367Splicing factor U2af large subunit B. (216 aa)    
Predicted Functional Partners:
BC332_28999
Splicing factor U2af small subunit A.
   
 0.979
BC332_02133
Splicing factor U2af small subunit B.
   
 0.957
BC332_26365
Splicing factor U2af small subunit A.
   
 0.928
BC332_06300
Pre-mRNA-processing factor 19-like protein 1.
   
 0.848
BC332_07070
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.838
BC332_22123
Zinc finger CCCH domain-containing protein 5.
   
 0.824
BC332_09261
U2 small nuclear ribonucleoprotein A.
   
 
 0.817
BC332_12311
PHD finger-like domain-containing protein 5A.
   
 
 0.816
BC332_26524
Small nuclear ribonucleoprotein F.
   
 
 0.815
BC332_06374
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 0.803
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.