STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_05179Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (727 aa)    
Predicted Functional Partners:
BC332_08059
Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic.
  
    0.809
BC332_02058
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
   0.573
BC332_29874
Biotin--protein ligase 1, chloroplastic.
  
  
 0.541
BC332_00501
Biotin--protein ligase 1, chloroplastic.
  
  
 0.541
BC332_08884
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
  
 
 0.493
BC332_23343
Ribonuclease II, chloroplastic/mitochondrial.
  
 0.484
BC332_10841
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
  
 0.484
BC332_05149
Uncharacterized protein; Belongs to the RNR ribonuclease family.
  
 0.484
BC332_17395
Oligoribonuclease.
     
 0.480
BC332_21841
TRUD domain-containing protein.
   
  
 0.476
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.