STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000000754CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1. (829 aa)    
Predicted Functional Partners:
ENSGMOP00000016164
General transcription factor IIF, polypeptide 1.
   
 0.988
ENSGMOP00000008275
Polymerase (RNA) II (DNA directed) polypeptide A.
    
 0.975
polr2c
RNA polymerase II subunit C.
    
 0.965
ENSGMOP00000000519
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.964
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.950
ENSGMOP00000018748
annotation not available
    
 0.949
ENSGMOP00000017428
Polymerase (RNA) II (DNA directed) polypeptide B.
   
 0.946
ENSGMOP00000001926
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.929
polr2j
RNA polymerase II subunit J.
    
 0.906
ENSGMOP00000007570
General transcription factor IIF, polypeptide 2b.
    
 0.900
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.