STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000000797Collagen, type VI, alpha 3. (2926 aa)    
Predicted Functional Partners:
ENSGMOP00000007899
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.
   
0.867
ENSGMOP00000019029
Integrin, beta 8.
    
 0.862
ENSGMOP00000002944
Integrin, beta 5.
    
 0.860
ENSGMOP00000002985
Integrin, beta 1a.
    
 0.860
ENSGMOP00000017523
Integrin, beta 1b.
    
 0.860
ENSGMOP00000000540
Integrin, beta 6.
    
 0.858
ENSGMOP00000014489
Integrin, alpha 8.
    
 0.857
ENSGMOP00000007675
annotation not available
    
  0.850
ENSGMOP00000017025
Integrin, alpha 9.
    
 0.850
ENSGMOP00000001731
annotation not available
    
 0.849
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.