Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSGMOP00000001034Ubiquitin-like 7b (bone marrow stromal cell-derived). (376 aa)    
Predicted Functional Partners:
ENSGMOP00000000629
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
   
 0.985
ENSGMOP00000019124
Excision repair cross-complementation group 1.
   
 0.968
ENSGMOP00000007861
Thyroid hormone receptor interactor 12.
    
 0.959
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.949
ENSGMOP00000011181
UBX domain protein 7.
    
 0.932
ENSGMOP00000003363
annotation not available
   
 0.930
ENSGMOP00000008409
Proteasome 26S subunit, non-ATPase 13.
   
 0.929
psmd2
Proteasome 26S subunit, non-ATPase 2.
   
 0.929
ENSGMOP00000012534
Ubiquitination factor E4A (UFD2 homolog, yeast).
   
 0.916
ENSGMOP00000012733
Ribosomal protein S27a.
    
  0.912
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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