ENSGMOP00000001034 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000001034

Ubiquitin-like 7b (bone marrow stromal cell-derived). (376 aa)

Predicted Functional Partners:

ENSGMOP00000011181

0.995

ENSGMOP00000013181

0.994

ENSGMOP00000014534

0.985

ENSGMOP00000019906

0.985

ENSGMOP00000003363

0.979

ENSGMOP00000008109

0.969

ENSGMOP00000002925

0.956

ENSGMOP00000008978

0.956

ENSGMOP00000012733

0.954

ENSGMOP00000008409

0.951

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSGMOP00000001034	ENSGMOP00000002925	Ubiquitin-like 7b (bone marrow stromal cell-derived).	NBR1 autophagy cargo receptor a.	0.956
ENSGMOP00000001034	ENSGMOP00000003363	Ubiquitin-like 7b (bone marrow stromal cell-derived).	annotation not available	0.979
ENSGMOP00000001034	ENSGMOP00000008109	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.969
ENSGMOP00000001034	ENSGMOP00000008409	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Proteasome 26S subunit, non-ATPase 13.	0.951
ENSGMOP00000001034	ENSGMOP00000008978	Ubiquitin-like 7b (bone marrow stromal cell-derived).	NBR1 autophagy cargo receptor b.	0.956
ENSGMOP00000001034	ENSGMOP00000011181	Ubiquitin-like 7b (bone marrow stromal cell-derived).	UBX domain protein 7.	0.995
ENSGMOP00000001034	ENSGMOP00000012733	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Ribosomal protein S27a.	0.954
ENSGMOP00000001034	ENSGMOP00000013181	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Myb-like, SWIRM and MPN domains 1.	0.994
ENSGMOP00000001034	ENSGMOP00000014534	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Intersectin 2b.	0.985
ENSGMOP00000001034	ENSGMOP00000019906	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Intersectin 2a.	0.985
ENSGMOP00000002925	ENSGMOP00000001034	NBR1 autophagy cargo receptor a.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.956
ENSGMOP00000002925	ENSGMOP00000003363	NBR1 autophagy cargo receptor a.	annotation not available	0.631
ENSGMOP00000002925	ENSGMOP00000008109	NBR1 autophagy cargo receptor a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.998
ENSGMOP00000002925	ENSGMOP00000008978	NBR1 autophagy cargo receptor a.	NBR1 autophagy cargo receptor b.	0.997
ENSGMOP00000002925	ENSGMOP00000012733	NBR1 autophagy cargo receptor a.	Ribosomal protein S27a.	0.998
ENSGMOP00000003363	ENSGMOP00000001034	annotation not available	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.979
ENSGMOP00000003363	ENSGMOP00000002925	annotation not available	NBR1 autophagy cargo receptor a.	0.631
ENSGMOP00000003363	ENSGMOP00000008109	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.983
ENSGMOP00000003363	ENSGMOP00000008409	annotation not available	Proteasome 26S subunit, non-ATPase 13.	0.999
ENSGMOP00000003363	ENSGMOP00000008978	annotation not available	NBR1 autophagy cargo receptor b.	0.631