STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000001060Microtubule-associated protein 1Sa. (604 aa)    
Predicted Functional Partners:
ENSGMOP00000012494
Microtubule-associated protein 1 light chain 3 alpha.
    
 0.582
LOC115550298
Microtubule-associated proteins 1A/1B light chain 3B.
    
 0.582
ENSGMOP00000006523
FMRP translational regulator 1.
    
 
 0.580
ENSGMOP00000000450
Fragile X mental retardation, autosomal homolog 1.
    
 
 0.541
ENSGMOP00000012082
Fragile X mental retardation, autosomal homolog 2.
    
 
 0.541
map1lc3c
Microtubule associated protein 1 light chain 3 gamma.
    
 0.533
gabarapl2
GABA type A receptor associated protein like 2.
    
 0.505
ENSGMOP00000008364
GABA(A) receptor-associated protein b.
    
 0.505
ENSGMOP00000008451
annotation not available
    
 0.505
LOC115554263
Gamma-aminobutyric acid receptor-associated protein-like 1.
    
 0.491
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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