STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000001571Nucleoporin 98. (1701 aa)    
Predicted Functional Partners:
ENSGMOP00000000027
Nucleoporin 93.
   
 0.999
nup85
Nucleoporin 85.
   
 0.999
ENSGMOP00000007553
RAN binding protein 2.
   
 0.999
ENSGMOP00000014790
Nucleoporin 155.
   
 0.999
ENSGMOP00000017796
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.999
rae1
Ribonucleic acid export 1.
   
 0.999
ENSGMOP00000018338
Nucleoporin 107.
   
 0.999
ENSGMOP00000004340
annotation not available
   
0.998
ENSGMOP00000014485
SEH1-like (S. cerevisiae).
   
 0.998
ENSGMOP00000014745
Nucleoporin 160.
   
 0.998
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.