STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000001891TATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (350 aa)    
Predicted Functional Partners:
ENSGMOP00000003424
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.
   
 0.975
ENSGMOP00000005173
TATA box binding protein like 2.
    
 0.903
ENSGMOP00000013314
TATA box binding protein.
    
 0.903
ENSGMOP00000010651
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.841
hint1
Histidine triad nucleotide binding protein 1.
    
 0.828
ENSGMOP00000006802
annotation not available
    
 0.828
POLR1E
RNA polymerase I subunit E.
     
 0.805
ENSGMOP00000020587
annotation not available
     
 0.785
ENSGMOP00000001624
Upstream binding transcription factor.
   
 0.778
ENSGMOP00000010127
Upstream binding transcription factor, like.
   
 0.778
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.