STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000001995Desmin a. (476 aa)    
Predicted Functional Partners:
banf1
Barrier to autointegration factor 1.
   
 0.729
ENSGMOP00000021849
annotation not available
   
 0.729
ENSGMOP00000010365
annotation not available
    
 
0.663
ENSGMOP00000004965
Glial fibrillary acidic protein.
  
 
 
0.661
ENSGMOP00000000184
Titin-cap (telethonin).
   
 
 0.576
RBM39
RNA binding motif protein 39.
    
 0.543
ENSGMOP00000014675
LEM domain containing 3.
    
 0.543
ENSGMOP00000017817
RNA binding motif protein 39b.
    
 0.543
ENSGMOP00000018889
annotation not available
    
 0.543
ENSGMOP00000010415
annotation not available
    
 0.537
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.