STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000002037URB1 ribosome biogenesis homolog. (2184 aa)    
Predicted Functional Partners:
ENSGMOP00000004509
Programmed cell death 11.
   
 
 0.965
ENSGMOP00000015989
HEAT repeat containing 1.
   
 
 0.924
ENSGMOP00000011157
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
   
 
 0.923
ENSGMOP00000006231
RNA polymerase I subunit B.
   
  
 0.905
ENSGMOP00000002436
RNA polymerase I subunit A.
   
    0.902
ENSGMOP00000007274
UTP20 small subunit processome component.
   
  
 0.896
ENSGMOP00000002981
N-acetyltransferase 10.
   
 
 0.892
ENSGMOP00000017748
PWP2 small subunit processome component.
   
  
 0.891
ENSGMOP00000000681
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.889
ENSGMOP00000010030
WD repeat domain 36.
   
  
 0.881
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.