STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000003016IQ motif and Sec7 domain ArfGEF 3b. (1034 aa)    
Predicted Functional Partners:
LOC115531165
Cytohesin-1.
    
 
0.514
ENSGMOP00000005825
Cytohesin 2.
    
 
0.514
ENSGMOP00000006472
Cytohesin 4b.
    
 
0.514
ENSGMOP00000009527
annotation not available
    
 
0.514
ENSGMOP00000010224
annotation not available
    
 
0.514
ENSGMOP00000012747
annotation not available
    
 
0.514
ENSGMOP00000014459
annotation not available
    
 
0.514
LOC115544443
ADP-ribosylation factor 6.
    
 
 0.489
ENSGMOP00000022051
ADP-ribosylation factor 6a.
    
 
 0.489
ENSGMOP00000003333
annotation not available
   
 
0.486
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.