dcun1d1 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dcun1d1

Defective in cullin neddylation 1 domain containing 1. (257 aa)

Predicted Functional Partners:

ENSGMOP00000002178

0.940

ENSGMOP00000004325

0.901

ENSGMOP00000004304

0.890

ube2m

0.890

CUL3

0.882

ENSGMOP00000018480

0.882

ENSGMOP00000006374

0.873

ENSGMOP00000019476

0.873

ENSGMOP00000019021

0.866

ENSGMOP00000007930

0.844

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	ENSGMOP00000002178	ENSGMOP00000006604	ENSGMOP00000002178	Cullin-3-like.	Ring-box 1, E3 ubiquitin protein ligase.	0.983
CUL3	ENSGMOP00000004304	ENSGMOP00000006604	ENSGMOP00000004304	Cullin-3-like.	Ubiquitin-conjugating enzyme E2F (putative).	0.883
CUL3	ENSGMOP00000004325	ENSGMOP00000006604	ENSGMOP00000004325	Cullin-3-like.	NEDD8 ubiquitin like modifier, like.	0.962
CUL3	ENSGMOP00000006374	ENSGMOP00000006604	ENSGMOP00000006374	Cullin-3-like.	annotation not available	0.645
CUL3	ENSGMOP00000007930	ENSGMOP00000006604	ENSGMOP00000007930	Cullin-3-like.	Ring finger protein 7.	0.923
CUL3	ENSGMOP00000019021	ENSGMOP00000006604	ENSGMOP00000019021	Cullin-3-like.	Cullin 2.	0.831
CUL3	ENSGMOP00000019476	ENSGMOP00000006604	ENSGMOP00000019476	Cullin-3-like.	Cullin 1a.	0.645
CUL3	dcun1d1	ENSGMOP00000006604	ENSGMOP00000003058	Cullin-3-like.	Defective in cullin neddylation 1 domain containing 1.	0.882
CUL3	ube2m	ENSGMOP00000006604	ENSGMOP00000012384	Cullin-3-like.	Ubiquitin conjugating enzyme E2 M.	0.883
ENSGMOP00000002178	CUL3	ENSGMOP00000002178	ENSGMOP00000006604	Ring-box 1, E3 ubiquitin protein ligase.	Cullin-3-like.	0.983
ENSGMOP00000002178	ENSGMOP00000004304	ENSGMOP00000002178	ENSGMOP00000004304	Ring-box 1, E3 ubiquitin protein ligase.	Ubiquitin-conjugating enzyme E2F (putative).	0.976
ENSGMOP00000002178	ENSGMOP00000004325	ENSGMOP00000002178	ENSGMOP00000004325	Ring-box 1, E3 ubiquitin protein ligase.	NEDD8 ubiquitin like modifier, like.	0.994
ENSGMOP00000002178	ENSGMOP00000006374	ENSGMOP00000002178	ENSGMOP00000006374	Ring-box 1, E3 ubiquitin protein ligase.	annotation not available	0.990
ENSGMOP00000002178	ENSGMOP00000007930	ENSGMOP00000002178	ENSGMOP00000007930	Ring-box 1, E3 ubiquitin protein ligase.	Ring finger protein 7.	0.798
ENSGMOP00000002178	ENSGMOP00000018480	ENSGMOP00000002178	ENSGMOP00000018480	Ring-box 1, E3 ubiquitin protein ligase.	Cullin 3b.	0.983
ENSGMOP00000002178	ENSGMOP00000019021	ENSGMOP00000002178	ENSGMOP00000019021	Ring-box 1, E3 ubiquitin protein ligase.	Cullin 2.	0.999
ENSGMOP00000002178	ENSGMOP00000019476	ENSGMOP00000002178	ENSGMOP00000019476	Ring-box 1, E3 ubiquitin protein ligase.	Cullin 1a.	0.990
ENSGMOP00000002178	dcun1d1	ENSGMOP00000002178	ENSGMOP00000003058	Ring-box 1, E3 ubiquitin protein ligase.	Defective in cullin neddylation 1 domain containing 1.	0.940
ENSGMOP00000002178	ube2m	ENSGMOP00000002178	ENSGMOP00000012384	Ring-box 1, E3 ubiquitin protein ligase.	Ubiquitin conjugating enzyme E2 M.	0.976
ENSGMOP00000004304	CUL3	ENSGMOP00000004304	ENSGMOP00000006604	Ubiquitin-conjugating enzyme E2F (putative).	Cullin-3-like.	0.883