STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP000000030682-oxoglutarate and iron-dependent oxygenase domain containing 1. (539 aa)    
Predicted Functional Partners:
tufm
Tu translation elongation factor, mitochondrial.
   
   0.870
ENSGMOP00000011667
trans-L-3-hydroxyproline dehydratase.
    
  0.850
ENSGMOP00000002804
Crystallin, mu.
    
  0.843
ENSGMOP00000011066
TSR1 ribosome maturation factor.
   
    0.752
ENSGMOP00000014862
Coproporphyrinogen oxidase.
   
  
 0.749
ENSGMOP00000000296
Polymerase (RNA) III (DNA directed) polypeptide A.
   
    0.748
ENSGMOP00000000756
BMS1 ribosome biogenesis factor.
   
    0.748
LOC115540698
Pyrroline-5-carboxylate reductase 1, mitochondrial-like.
     
 0.718
ENSGMOP00000020102
annotation not available
     
 0.718
ENSGMOP00000002609
ATP-binding cassette, sub-family F (GCN20), member 3.
  
   0.659
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.