STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000003535annotation not available (152 aa)    
Predicted Functional Partners:
ENSGMOP00000009303
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.988
ENSGMOP00000008455
RAD18 E3 ubiquitin protein ligase.
    
 0.980
ENSGMOP00000018668
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.959
ENSGMOP00000021004
annotation not available
   
 0.959
ENSGMOP00000012733
Ribosomal protein S27a.
   
 0.948
ENSGMOP00000015870
Ring finger protein 20, E3 ubiquitin protein ligase.
    
 0.948
ENSGMOP00000017834
Ring finger protein 40.
    
 0.948
ENSGMOP00000003684
Ubiquitin like modifier activating enzyme 6.
   
 0.930
ENSGMOP00000011820
Ubiquitin-like modifier activating enzyme 1.
   
 0.930
ENSGMOP00000017545
Ubiquitin-like modifier activating enzyme 7.
   
 0.930
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.