STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000003707VPS54 subunit of GARP complex. (940 aa)    
Predicted Functional Partners:
ENSGMOP00000001487
VPS53 subunit of GARP complex.
   
 0.998
ENSGMOP00000011496
VPS52 subunit of GARP complex.
    
 0.997
ENSGMOP00000020241
VPS51 subunit of GARP complex.
   
 0.989
ENSGMOP00000016395
Syntaxin 16.
    
 0.931
ENSGMOP00000009425
VPS50 EARP/GARPII complex subunit.
   
 
 0.918
ENSGMOP00000000766
EARP complex and GARP complex interacting protein 1.
    
 
 0.910
ENSGMOP00000002510
Component of oligomeric golgi complex 6.
    
 0.869
cog8
Component of oligomeric golgi complex 8.
    
 0.869
ENSGMOP00000009856
Component of oligomeric golgi complex 7.
     
 0.854
ENSGMOP00000014976
annotation not available
    
 0.854
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.