STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000003846Excision repair cross-complementation group 6. (1253 aa)    
Predicted Functional Partners:
polr2i
RNA polymerase II subunit I.
    
 0.992
ENSGMOP00000008375
Excision repair cross-complementation group 8.
    
 0.991
ENSGMOP00000017428
Polymerase (RNA) II (DNA directed) polypeptide B.
   
 0.991
ENSGMOP00000001926
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.986
ENSGMOP00000000062
Xeroderma pigmentosum, complementation group A.
    
 0.984
ENSGMOP00000008275
Polymerase (RNA) II (DNA directed) polypeptide A.
    
 0.981
ENSGMOP00000020854
Damage-specific DNA binding protein 1.
    
 0.981
ENSGMOP00000010653
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.978
ENSGMOP00000000519
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.977
polr2c
RNA polymerase II subunit C.
   
 0.977
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.