STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd5Programmed cell death 5. (127 aa)    
Predicted Functional Partners:
ENSGMOP00000017496
Small nuclear ribonucleoprotein polypeptide E.
   
    0.902
ENSGMOP00000005457
Si:dkey-159f12.2.
   
    0.888
ENSGMOP00000014634
Mitochondrial ribosomal protein L22.
   
    0.888
ENSGMOP00000002317
Ribosomal protein L30.
   
    0.876
rps28
Ribosomal protein S28.
  
    0.875
ENSGMOP00000004232
Prefoldin subunit 4.
  
   0.869
rpl35
Ribosomal protein L35.
   
    0.865
ENSGMOP00000005220
Mitochondrial ribosomal protein L11.
  
    0.863
ENSGMOP00000006771
Ribosomal protein L12.
  
    0.863
ENSGMOP00000015087
Ribosomal protein S19.
  
    0.863
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.