ENSGMOP00000003975 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000003975

Si:ch211-219a15.3. (313 aa)

Predicted Functional Partners:

ENSGMOP00000011583

0.576

ENSGMOP00000000371

0.531

ENSGMOP00000008109

0.466

ENSGMOP00000012733

0.466

ENSGMOP00000006194

0.453

ENSGMOP00000006408

0.453

ENSGMOP00000014099

0.451

PTK7

0.445

ENSGMOP00000013082

0.437

ENSGMOP00000013137

0.437

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGMOP00000000371	ENSGMOP00000003975	ENSGMOP00000000371	ENSGMOP00000003975	annotation not available	Si:ch211-219a15.3.	0.531
ENSGMOP00000000371	PTK7	ENSGMOP00000000371	ENSGMOP00000012396	annotation not available	Protein tyrosine kinase 7 (inactive).	0.470
ENSGMOP00000003975	ENSGMOP00000000371	ENSGMOP00000003975	ENSGMOP00000000371	Si:ch211-219a15.3.	annotation not available	0.531
ENSGMOP00000003975	ENSGMOP00000006194	ENSGMOP00000003975	ENSGMOP00000006194	Si:ch211-219a15.3.	annotation not available	0.453
ENSGMOP00000003975	ENSGMOP00000006408	ENSGMOP00000003975	ENSGMOP00000006408	Si:ch211-219a15.3.	SET domain bifurcated histone lysine methyltransferase 1b.	0.453
ENSGMOP00000003975	ENSGMOP00000008109	ENSGMOP00000003975	ENSGMOP00000008109	Si:ch211-219a15.3.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.466
ENSGMOP00000003975	ENSGMOP00000011583	ENSGMOP00000003975	ENSGMOP00000011583	Si:ch211-219a15.3.	annotation not available	0.576
ENSGMOP00000003975	ENSGMOP00000012733	ENSGMOP00000003975	ENSGMOP00000012733	Si:ch211-219a15.3.	Ribosomal protein S27a.	0.466
ENSGMOP00000003975	ENSGMOP00000013082	ENSGMOP00000003975	ENSGMOP00000013082	Si:ch211-219a15.3.	Receptor-interacting serine-threonine kinase 4.	0.437
ENSGMOP00000003975	ENSGMOP00000013137	ENSGMOP00000003975	ENSGMOP00000013137	Si:ch211-219a15.3.	annotation not available	0.437
ENSGMOP00000003975	ENSGMOP00000014099	ENSGMOP00000003975	ENSGMOP00000014099	Si:ch211-219a15.3.	Regulatory associated protein of MTOR, complex 1.	0.451
ENSGMOP00000003975	PTK7	ENSGMOP00000003975	ENSGMOP00000012396	Si:ch211-219a15.3.	Protein tyrosine kinase 7 (inactive).	0.445
ENSGMOP00000006194	ENSGMOP00000003975	ENSGMOP00000006194	ENSGMOP00000003975	annotation not available	Si:ch211-219a15.3.	0.453
ENSGMOP00000006194	ENSGMOP00000008109	ENSGMOP00000006194	ENSGMOP00000008109	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.684
ENSGMOP00000006194	ENSGMOP00000012733	ENSGMOP00000006194	ENSGMOP00000012733	annotation not available	Ribosomal protein S27a.	0.468
ENSGMOP00000006194	ENSGMOP00000013082	ENSGMOP00000006194	ENSGMOP00000013082	annotation not available	Receptor-interacting serine-threonine kinase 4.	0.580
ENSGMOP00000006194	ENSGMOP00000013137	ENSGMOP00000006194	ENSGMOP00000013137	annotation not available	annotation not available	0.580
ENSGMOP00000006194	PTK7	ENSGMOP00000006194	ENSGMOP00000012396	annotation not available	Protein tyrosine kinase 7 (inactive).	0.483
ENSGMOP00000006408	ENSGMOP00000003975	ENSGMOP00000006408	ENSGMOP00000003975	SET domain bifurcated histone lysine methyltransferase 1b.	Si:ch211-219a15.3.	0.453
ENSGMOP00000006408	ENSGMOP00000008109	ENSGMOP00000006408	ENSGMOP00000008109	SET domain bifurcated histone lysine methyltransferase 1b.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.684