STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000003977Transcription factor 25 (basic helix-loop-helix). (661 aa)    
Predicted Functional Partners:
ENSGMOP00000000633
annotation not available
   
 
 0.838
NEMF
Nuclear export mediator factor.
    
 
 0.827
ENSGMOP00000005233
Valosin containing protein.
   
 
 0.719
ENSGMOP00000004013
Spire-type actin nucleation factor 2.
 
  
 
 0.655
ENSGMOP00000012331
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.654
ENSGMOP00000020758
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
   
 
 0.653
ENSGMOP00000011826
annotation not available
   
 
 0.635
ENSGMOP00000016120
Spermatogenesis associated 5-like 1.
   
 
 0.635
ENSGMOP00000007356
annotation not available
    
   0.627
ENSGMOP00000017617
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
  
 0.621
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.