STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam78aFamily with sequence similarity 78 member A. (262 aa)    
Predicted Functional Partners:
ENSGMOP00000017734
Cytochrome b5 reductase 4.
   
 0.799
ENSGMOP00000014898
Glucuronidase, beta.
   
 0.763
ENSGMOP00000018745
UDP glucuronosyltransferase 5 family, polypeptide G1.
     
 0.726
ENSGMOP00000007274
UTP20 small subunit processome component.
   
 0.724
ENSGMOP00000001794
WD repeat domain 43.
   
 0.707
rps6
Ribosomal protein S6.
   
  0.688
dcaf13
DDB1 and CUL4 associated factor 13.
   
  0.686
ENSGMOP00000007331
UTP11 small subunit processome component.
   
  0.686
ENSGMOP00000011792
EMG1 N1-specific pseudouridine methyltransferase.
   
  0.686
ENSGMOP00000016784
FCF1 rRNA-processing protein.
   
  0.686
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.