STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000004331Peptide deformylase, mitochondrial. (205 aa)    
Predicted Functional Partners:
ENSGMOP00000014634
Mitochondrial ribosomal protein L22.
   
 
 0.956
ENSGMOP00000011725
annotation not available
  
 
 0.953
ENSGMOP00000017029
Branched chain keto acid dehydrogenase E1 subunit alpha.
  
 
 0.947
ENSGMOP00000000799
Mitochondrial methionyl-tRNA formyltransferase.
  
 0.946
ENSGMOP00000014545
Mitochondrial ribosomal protein L17.
   
   0.946
ENSGMOP00000021297
Mitochondrial ribosomal protein S6.
   
   0.942
ENSGMOP00000001630
Mitochondrial ribosomal protein S16.
  
   0.940
ENSGMOP00000008696
Mitochondrial ribosomal protein L20.
  
 
 0.940
ENSGMOP00000000531
Mitochondrial ribosomal protein L27.
  
   0.937
ENSGMOP00000018210
Mitochondrial ribosomal protein L9.
  
   0.934
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.