STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000004345SMG9 nonsense mediated mRNA decay factor. (509 aa)    
Predicted Functional Partners:
ENSGMOP00000018690
SMG8 nonsense mediated mRNA decay factor.
    
 0.999
ENSGMOP00000013281
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 0.988
ENSGMOP00000010431
Mechanistic target of rapamycin kinase.
    
 0.907
ENSGMOP00000019534
Protein kinase, DNA-activated, catalytic subunit.
    
 0.907
ENSGMOP00000007822
SMG5 nonsense mediated mRNA decay factor.
   
 
 0.837
ENSGMOP00000020534
SMG6 nonsense mediated mRNA decay factor.
   
 
 0.832
ENSGMOP00000005236
SMG7 nonsense mediated mRNA decay factor.
   
 
 0.831
ENSGMOP00000007849
RNA binding motif protein 8A.
    
 
 0.804
ENSGMOP00000012308
Proline-rich nuclear receptor coactivator 2.
     
 0.783
ENSGMOP00000015250
Decapping mRNA 1A.
     
 0.736
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.