STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPSF7Cleavage and polyadenylation specific factor 7. (383 aa)    
Predicted Functional Partners:
ENSGMOP00000003023
Nudix hydrolase 21.
   
 0.969
ENSGMOP00000005470
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.876
ENSGMOP00000013850
Cleavage and polyadenylation specific factor 6.
  
  
 
0.857
ENSGMOP00000004812
U2 small nuclear RNA auxiliary factor 2a.
   
 0.833
ENSGMOP00000001025
PCF11 cleavage and polyadenylation factor subunit.
    
 0.808
ENSGMOP00000002524
Symplekin.
   
 0.799
ENSGMOP00000000852
Cleavage and polyadenylation specific factor 1.
   
 0.794
ENSGMOP00000009381
Cleavage and polyadenylation specific factor 2.
   
 0.783
ENSGMOP00000011354
annotation not available
   
 0.775
ENSGMOP00000015830
Serine and arginine rich splicing factor 1b.
   
 0.775
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.