STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000004477Family with sequence similarity 207 member A. (221 aa)    
Predicted Functional Partners:
ENSGMOP00000012718
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
   0.938
ENSGMOP00000004482
Ribosomal RNA processing 12 homolog.
    
 
 0.923
bysl
Bystin like.
    
 
 0.907
ENSGMOP00000005564
LTV1 ribosome biogenesis factor.
    
 
 0.852
ENSGMOP00000009671
BUD23 rRNA methyltransferase and ribosome maturation factor.
    
   0.831
ENSGMOP00000011561
DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).
   
   0.823
ENSGMOP00000009440
tRNA methyltransferase subunit 11-2.
   
   0.822
ENSGMOP00000011066
TSR1 ribosome maturation factor.
    
 
 0.816
ENSGMOP00000019643
UTP14C small subunit processome component.
    
   0.814
ENSGMOP00000001516
Partner of NOB1 homolog.
    
   0.813
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.