STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000004521Zinc finger DHHC-type containing 16a. (390 aa)    
Predicted Functional Partners:
ENSGMOP00000009839
Spindle and kinetochore associated complex subunit 1.
   
 
 0.663
ENSGMOP00000014095
annotation not available
   
 
 0.660
ENSGMOP00000010186
annotation not available
   
 
 0.627
ENSGMOP00000002090
Timeless circadian clock.
   
 
 0.611
rpa3
Replication protein A3.
   
   0.596
ENSGMOP00000014547
Ring finger and WD repeat domain 3.
    
   0.590
ENSGMOP00000002898
Zinc finger, RAN-binding domain containing 3.
    
 
 0.521
ENSGMOP00000010728
annotation not available
    
 
 0.521
zdhhc21
Zinc finger DHHC-type containing 21.
     
0.485
ENSGMOP00000005745
Methionine sulfoxide reductase B1b.
   
   0.409
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.