STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000004893Si:dkey-85a20.4. (1363 aa)    
Predicted Functional Partners:
ENSGMOP00000018617
Mitochondrial ribosomal protein L47.
   
 
 0.921
ENSGMOP00000014545
Mitochondrial ribosomal protein L17.
  
 
 0.920
ENSGMOP00000014610
GTP binding protein 3, mitochondrial.
   
 
 0.911
ENSGMOP00000011725
annotation not available
   
   0.910
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
   
 
 0.908
ENSGMOP00000010582
Mitochondrial ribosomal protein L43.
    
   0.898
ENSGMOP00000004722
GTP binding protein 8 (putative).
  
 
 0.885
ENSGMOP00000004509
Programmed cell death 11.
  
   0.871
ENSGMOP00000005167
Pseudouridine synthase 7.
   
   0.862
ENSGMOP00000020901
Pseudouridine synthase 7 like.
   
   0.860
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.