STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000004996Nonhomologous end-joining factor 1. (254 aa)    
Predicted Functional Partners:
ENSGMOP00000015639
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
 0.989
ENSGMOP00000013746
Ligase IV, DNA, ATP-dependent.
    
 0.986
ENSGMOP00000014473
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.976
ENSGMOP00000019534
Protein kinase, DNA-activated, catalytic subunit.
    
 0.975
ENSGMOP00000011822
Glycerophosphocholine phosphodiesterase 1.
    
 0.932
ENSGMOP00000003984
Ligase I, DNA, ATP-dependent.
    
 0.822
ENSGMOP00000003531
Ligase III, DNA, ATP-dependent.
    
 0.821
ENSGMOP00000017529
DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).
   
 
 0.810
ENSGMOP00000015555
Polymerase (DNA directed), mu.
     
 0.773
ENSGMOP00000010431
Mechanistic target of rapamycin kinase.
    
 0.751
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.