STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000005094Chromosome 12 open reading frame 4. (550 aa)    
Predicted Functional Partners:
ENSGMOP00000008022
SLX1 homolog B, structure-specific endonuclease subunit.
   
    0.793
exoc8
Exocyst complex component 8.
   
    0.790
ENSGMOP00000017232
Protein phosphatase 1, regulatory subunit 21.
    
 
 0.735
tbck
TBC1 domain containing kinase.
    
 
 0.713
ENSGMOP00000010132
TBC1 domain family, member 31.
    
 
 0.574
ENSGMOP00000008525
annotation not available
    
   0.553
ENSGMOP00000017337
Zinc finger protein 330.
      
 0.491
ENSGMOP00000005017
Transmembrane protein 106C.
      
 0.489
ENSGMOP00000008838
annotation not available
   
   0.429
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.